Monday 17 August 2020

Regulation of Floral Development (Part I)

To access and download PowerPoint presentation on 'Regulation of Floral Development' click on the link below:

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Parts of a flower

The flower consists of several leaf-like structures attached to a specialized region of the stem called the receptacle. 
Calyx (unit: sepal):
It represents the outermost whorl and protects the inner whorls in buds.
They can photosynthesize.
Corolla (unit: petal):
It primarily attracts insects to serve as pollinators and are often showy and brightly-colored appearance.
Androecium (unit: stamen): 
It is the male sexual structure.
The stamen consists of a narrow stalk called the filament and a chambered structure called the anther.
The anther contains tissue that gives rise to pollen grains.
Gynoecium (unit: carpel): 
It is the female sexual structure.
The carpel consists of the stigma (the tip where pollen lands during pollination), the style (an elongated structure), and the basal ovary.
The ovary encloses one or more ovules.
Each ovule, in turn, contains an embryo sac, the structure that gives rise to the female gamete, the egg.

Flower is a modified determinate shoot


Homology of the floral bud with a vegetative bud

Floral and vegetative buds both emerge either in terminal or in axillary position
The floral buds may sometimes get modified into vegetative buds or bulbils (e.g. Agave, Allium). Thus proving that the two are analogous structures.

Axis nature of receptacle

The internodes in floral axis remain highly reduced yet in a number of plants such as Capparis, Passiflora etc. the receptacle shows prominent nodes and internodes.
In certain plants (eg., rose, pear, etc.), sometimes the receptacle of the flower continues its growth even after producing all the four types of floral appendages and then produces normal foliage leaves.
In Michelia champaca the thalamus can elongate like an ordinary stem beyond carpels and bears aggregate fruit.

          

Foliage nature of floral appendages

Foliage leaves (phyllotaxy) and floral appendages (aestivation) have an identical arrangement on the stem.
Sometimes, sepal can be modified to an enlarged leaf-like structure as seen in Mussaenda.

Transition of floral leaves

In nature, in many cases, such as Nymphaea (water lily) all degrees of transition from sepals to petals and from petals to stamens can be seen.
In Canna, the stamens and the style become petaloid.
In Zinnia, some of the stamens and carpels become petaloid or sepaloid.

Floral development

Transition to flowering involves major changes in the pattern of morphogenesis and cell differentiation at the shoot apical meristem leading to the formation of the floral organs.

These events are collectively referred to as floral evocation.

The developmental signals that bring about floral evocation include:

Ø Endogenous factors: circadian rhythms, phase change, and hormones
Ø External factors: day length (photoperiod) and temperature (vernalization)

In the case of photoperiodism, transmissible signals from the leaves collectively referred to as the floral stimulus, are translocated to the shoot apical meristem.
The interactions of these endogenous and external factors enable plants to synchronize their reproductive development with the environment.

Floral meristems and floral organ development

The transition from vegetative to reproductive development is marked by an increase in the frequency of cell divisions within the central zone of the shoot apical meristem.
As reproductive development commences, the increase in the size of the meristem is largely a result of the increased division rate of these central cells.



Four Different Types of Floral Organs Are Initiated as Separate Whorls
   •Floral meristems initiate four different types of floral organs in concentric rings (called whorls): sepals, petals, stamens, and carpels.
    •In Arabidopsis flower, the whorls are arranged as follows:
  • ØThe first (outermost) whorl consists of four sepals, which are green at maturity.
  • ØThe second whorl is composed of four petals, which are white at maturity.
  • ØThe third whorl contains six stamens, two of which are shorter than the other four.
  • ØThe fourth whorl is a single complex organ, the gynoecium or pistil, which is composed of an ovary with two fused carpels, each containing numerous ovules, and a short style capped with a stigma.


Three Types of Genes Regulate Floral Development

Three classes of genes regulate floral development:
Meristem identity genes are necessary for the initial induction of the organ identity genes. These genes are the positive regulators of floral organ identity.
Floral organ identity genes directly control floral identity. The proteins encoded by these genes are transcription factors that likely control the expression of other genes whose products are involved in the formation and/or function of floral organs.
Cadastral genes act as spatial regulators of the floral organ identity genes by setting boundaries for their expression.

Meristem Identity Genes Regulate Meristem Function

Meristem identity genes must be active for the proper floral meristem development.
In Arabidopsis, three genes must be activated to establish floral meristem identity:
ØAGAMOUS-LIKE 20, also called SUPPRESSOR OF OVEREXPRESSION OF CONSTANS 1 (AGL20/SOC1)
ØAPETALA1 (AP1)
ØLEAFY (LFY)
AGL20 serves as a master switch initiating floral development by integrating signals from both environmental and internal cues.
Once activated, AGL20 triggers the expression of LFY, and LFY turns on the expression of AP1.
AP1 expression also stimulates the expression of LFY (positive feedback loop).

Homeotic Mutations Led to the Identification of Floral Organ Identity Genes

The genes that determine floral organ identity was discovered as floral homeotic mutants.
Mutations in these genes resulted in development of the floral organs in the wrong place.
Because mutations in these genes change floral organ identity without affecting the initiation of flowers, they are homeotic genes.
Five different genes are known to specify floral organ identity in Arabidopsis:
ØAPETALA1 (AP1)
ØAPETALA2 (AP2)
ØAPETALA3 (AP3)
ØPISTILLATA (PI)
ØAGAMOUS (AG)
The homeotic genes encode transcription factors—proteins that control the expression of other genes.
Most plant homeotic genes belong to MADS box genes.
The MADS domain enables these transcription factors to bind to specific DNA motifs.
Not all genes containing the MADS box domain are homeotic genes.
For example, AGL20 is a MADS box gene, but it functions as a meristem identity gene.
The organ identity genes initially were identified through homeotic mutations.

The ABC model for floral development

In 1991 the ABC model was proposed to explain how homeotic genes control organ identity.

  •The ABC model for the acquisition of floral organ identity is based on the interactions of the three different types of activities of floral homeotic genes: A, B, and C. 
ØActivity of type A alone specifies sepals.
ØActivities of both A and B are required for the formation of petals.
ØActivities of B and C form stamens.
ØActivity of C alone specifies carpels.


Type A activity:

Encoded by AP2
Controls organ identity in the first and second whorls.
Loss of activity results in the formation of carpels instead of sepals in the first whorl, and of stamens instead of petals in the second whorl.

Type B activity:

Encoded by AP3 and PI
Controls organ determination in the second and third whorls
Loss of activity results in the formation of sepals instead of petals in the second whorl, and of carpels instead of stamens in the third whorl.
Type C activity:
Encoded by AG
Controls events in the third and fourth whorls.
Loss of activity results in the formation of petals instead of stamens in the third whorl, and replacement of the fourth whorl by a new flower such that the fourth whorl of the ag mutant flower is occupied by sepals.
 
Quadruple-mutant plants (ap1, ap2, ap3/pi, and ag) produce floral meristems that develop as pseudoflowers. All the floral organs are replaced with green leaflike structures, although these organs are produced with a whorled phyllotaxy.
This demonstrates that the floral organs are highly modified leaves.

The ABCE model (Quartet model)

•A class genes specify sepals in the first whorl.
•A and B class genes specify petals within the second whorl.
•B and C class genes specify stamens within the third whorl
•C class gene function specifies carpel identity within the fourth whorl.
The E class genes (SEPALLATA 1-4) are active within all four whorls.
•Combinatorial interactions of floral organ identity factors within each whorl form tetrameric complexes.
•These floral organ identity factors can act as pioneer factors, influencing chromatin accessibility throughout flower development.
Additionally, class D genes regulate ovule development.

Thomson et al. 2017 (Plant Physiology)



(Images kindly shared by Oxford University Press and are being used for teaching purpose only)


Chromosomal Aberration (Part I)

To access and download PowerPoint presentation on 'Chromosomal Aberration' click on the link below:


BASIC TERMS TO BE REMEMBERED


¢Karyotyping: refers to a full set of chromosomes from an  individual, or a photographic arrangement of a set of  chromosomes of an individual.

¢Chromatid: either of the two daughter strands of the replicated chromosome that are joined by centromere and  separate during cell division.

¢Constituent of chromosome: DNA, RNA, HISTONES (and some non-histone proteins)

¢No. of chromosomes in human: 22 pairs of autosomes & a pair of sex  chromosomes.

  Diploid: 46 (44+XX or 44+XY) 
     Haploid : 23 (22+X or 22+Y)


STRUCTURE OF CHROMOSOME



TYPES OF CHROMOSOMES 


ABERRATION

Any departure or deviation from normal.

CHROMOSOMAL ABERRATION


Any aberration in the shape, size or structure of a chromosome is called chromosomal aberration.

It reflects an atypical number or a structure in one or  more chromosomes.

TYPES OF CHROMOSOMAL ABERRATION

1. Structural aberration

2. Numerical aberration


STRUCTURAL ABNORMALITIES

1.Deletion: Part of a chromosome segment is lost, maybe small or large portion.
2.Duplication: Section of a chromosome is in duplicate, usually less harmful. Extra genetic material causes birth defects.
3.Inversion: Two  breaks in chromosome & then broken fragment reinserted in an inverted fashion.
4. Translocation: Transfer of full or a part of a chromosome to another chromosome. 
5. Fragile site: Constriction at sites other than centromere.  There is more tendency to break. Ex: X linked mental retardation, fragile X syndrome.
6. Ring chromosome: Two breaks in the chromosome and  these broken ends stick back together.

DELETION
A missing chromosome segment is referred to either as a deletion or as a deficiency.
Large deletions can be detected cytologically by studying the banding patterns in stained chromosomes, but small ones cannot.
In diploid organisms, the deletion of a chromosome segment makes part of the genome hypoploid.
May be associated with a phenotypic effect, especially if the deletion is large.
In case of a deletion heterozygote, where the dominant allele of a gene has been deleted, the recessive allele of the deleted gene is generally expressed. This is called pseudodominance.
Example: cri-du-chat syndrome in human
•Caused by a deletion in the short arm of chromosome 5
•Individuals heterozygous for the deletion have the karyotype 46 del(5)(p14)
•Bands in region 14 of the short arm (p) of one of the chromosomes 5 is missing.
•These individuals may be severely impaired, mentally as well as physically


DUPLICATION
•An extra chromosome segment is referred to as a duplication. 
•The extra segment can be attached to one of the chromosomes, or it can exist as a new and separate chromosome, that is, as a “free duplication”.
The organism becomes hyperploid for part of its genome.


•May be associated with a phenotypic effect.
•Example: Effect of duplications for region 16A of the X chromosome on the size of the eyes in Drosophila.


Tandem Duplications are adjacent to each other.
Reverse Tandem Duplications result in genes arranged in opposite order of the original.
Tandem duplication at the end of chromosome is a  Terminal tandem duplication.

INVERSION
An inversion occurs when a chromosome segment is detached, flipped around 180º, and reattached to the rest of the chromosome.
The order of the segment’s genes is reversed.
Pericentric inversions include the centromere, whereas paracentric inversions do not.
Pericentric inversion:
•Inverted segment includes the centromere 
•May change the relative lengths of the two arms of the chromosome 
•If an acrocentric chromosome acquires a pericentric inversion, it can be transformed into a metacentric chromosome and vice versa.
Paracentric inversion: 
•Inverted segment does not include the centromere 
•Does not change the relative lengths of the two arms of the chromosome 
•If an acrocentric chromosome acquires a paracentric inversion, the morphology of the chromosome will not be changed.


Suppression of recombination in an inversion heterozygote

An individual in which one chromosome is inverted but its homologue is not is said to be an inversion heterozygote.
•During meiosis, the inverted and non-inverted chromosomes pair point-for-point along their length. Because of the inversion, the chromosomes must form a loop to allow for pairing in the inverted region.
•Any one of the chromosomes is looped, and the other conforms around it.

Pericentric inversion:

•As a result of crossing over inside the loop, daughter chromosomes with deletions/duplications for the inverted region are produced which are non-viable.
•Only the gametes with parental chromosomes (one normal and one inverted) are recovered.


Paracentric inversion:
Here, as a result of crossing over, one acentric and one dicentric chromosomes are formed.
In addition, the recombinant products contain deletions/duplications for the inverted region and are non-viable.
Only the gametes with parental chromosomes are recovered.



                   TRANSLOCATION
A translocation occurs when a segment from one chromosome is detached and reattached to a different (that is, non-homologous) chromosome.
When pieces of two non-homologous chromosomes are interchanged without any net loss of genetic material, the event is referred to as a reciprocal translocation.
During meiosis, the translocated chromosomes pair with their untranslocated homologues in a cruciform, or crosslike, pattern.
This pairing configuration is diagnostic of a translocation heterozygote.
Cells in which the translocated chromosomes are homozygous do not form a cruciform pattern but pair normally with its structurally identical partner.


Altogether there are three possible disjunctional events:
1.Adjacent disjunction I: If centromeres 2 and 4 (i.e. centromeres from non-homologous chromosomes that are next to each other) move to the same pole, forcing 1 and 3 to the opposite pole, all the resulting gametes will be aneuploid—because some chromosome segments will be deficient for genes, and others will be duplicated.

2.Adjacent disjunction II: If centromeres 1 and 2 (i.e. centromeres from the homologous chromosomes that are next to each other) move to one pole and 3 and 4 to the other, only aneuploid gametes will be produced. Each of these cases is referred to as adjacent disjunction because centromeres that were next to each other in the cruciform pattern moved to the same pole.

3.Alternate disjunction: If centromeres 1 and 4 (i.e. centromeres from non-homologous chromosomes that are alternate to each other) move to the same pole, forcing 2 and 3 to the opposite pole, only euploid gametes will be produced, and half of them will carry only translocated chromosomes.

Translocation heterozygotes are therefore characterized by low fertility. 

ROBERTSONIAN TRANSLOCATION
Non-homologous chromosomes can fuse at their centromeres, creating a structure called a Robertsonian translocation.
For example, if two acrocentric chromosomes fuse, they will produce a metacentric chromosome; the tiny short arms of the participating chromosomes are simply lost in this process.
Human chromosome 2, which is metacentric, has arms that correspond to two different acrocentric chromosomes in the genomes of the great apes.
Chromosomes can also fuse end-to-end to form a structure with two centromeres. If one of the centromeres is inactivated, the chromosome fusion will be stable.


COMPOUND CHROMOSOMES
Sometimes one chromosome fuses with its homologue, or two sister chromatids become attached to each other, forming a single genetic unit.
A compound chromosome can exist stably in a cell as long as it has a single functional centromere.
If there are two centromeres, each may move to a different pole during division, pulling the compound chromosome apart.
A compound chromosome may also be formed by the union of homologous chromosome segments. For example, the right arms of the two second chromosomes in Drosophila might detach from their left arms and fuse at the centromere, creating a compound half-chromosome.
This structure is called an isochromosome, because its two arms are equivalent.
Compound chromosomes differ from translocations in that they involve fusions of homologous chromosome segments. Translocations, by contrast, always involve fusions between nonhomologous chromosomes.

POSITION EFFECT VARIEGATION
Gene action can be blocked by proximity to the heterochromatin regions of chromosome and this can result from translocation or inversion events.
The locus for white eye color in Drosophila is near the tip of the X chromosome.
The allele w+ gives red color while the recessive w allele gives white color.
If a translocation occurs in which the tip of an X chromosome carrying w+ is relocated next to the heterochromatic region of chromosome 4, w+ locus is inactivated.
Position-effect variegation is observed in flies that are heterozygotes for such a translocation.
The w+ allele is not always expressed because the heterochromatin boundary is somewhat variable: in some cells it engulfs and inactivates the w+ gene, thereby allowing the expression of w.
If the position of the w+ and w alleles is exchanged by a crossover, then position-effect variegation is not detected.