Tuesday, 26 May 2026

Mineral nutrition and solute transport (GEN)

 

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Mineral Nutrition and Agricultural Yields

The study of how plants obtain and use mineral nutrients is called mineral nutrition.

High agricultural yields are directly dependent on the use of mineral fertilizers. In fact, the yields of most crops show a direct, linear increase with the amount of fertilizer they absorb. This is because crops need essential nutrients like nitrogen (N), phosphorus (P), and potassium (K) to grow and thrive.

Global consumption of these primary fertilizer elements has risen dramatically over the past several decades. From 1960 to 1990, annual consumption surged from 30 million to 143 million metric tons. After a decade of more careful use due to rising costs, consumption has again climbed, reaching 180 million metric tons per year in 2010.

Defining Essential Elements for Plants

An essential element is a chemical element that a plant must have to complete its life cycle. Without it, the plant will show severe abnormalities in its growth, development, or reproduction. 

These elements are a fundamental part of the plant's structure or metabolism.

Plants can synthesize all the necessary compounds for normal growth if they have access to these essential elements, along with water and sunlight. 

Classification of Essential Mineral Elements

Essential mineral elements are classified into two groups based on their concentration in plant tissue:
  • Macronutrients: needed in large quantities.
  • Micronutrients: needed in very small quantities, often called trace elements.
The first three elements—hydrogen (H), carbon (C), and oxygen (O)—are crucial but are not classified as mineral nutrients because plants primarily get them from water (H2​O) and carbon dioxide (CO2​).

ElementChemical symbolConcentration in dry matter (% or ppm)
Obtained from water or carbon dioxide
HydrogenH6
CarbonC45
OxygenO45
Obtained from the soil
Macronutrients
NitrogenN1.5
PotassiumK1
CalciumCa0.5
MagnesiumMg0.2
PhosphorusP0.2
SulfurS0.1
SiliconSi0.1
Micronutrients
ChlorineCl100
IronFe100
BoronB20
ManganeseMn50
SodiumNa10
ZincZn20
CopperCu6
NickelNi0.1
MolybdenumMo0.1


A more functional classification system, based on the biochemical role of the elements, divides essential elements into four groups:

  • Group 1: Building Blocks of Organic Compounds

These elements, nitrogen (N) and sulfur (S), are assimilated by plants and used to create essential organic molecules like amino acids, nucleic acids, and proteins.

  • Group 2: Energy Storage and Structural Integrity

This group includes elements like phosphorus (P), boron (B), and silicon (Si). They are often found in the plant as esters, playing a vital role in energy storage reactions and maintaining the structural integrity of the plant.

  • Group 3: Osmotic and Enzymatic Regulation 

Elements in this group, such as potassium (K), calcium (Ca), and magnesium (Mg), exist as free or bound ions in plant tissue. They act as enzyme cofactors, regulate the plant's osmotic potential, and control membrane permeability.

  • Group 4: Electron Transfer 

This group is made up of metals like iron (Fe), which are crucial for reactions involving the transfer of electrons, such as those that occur during photosynthesis and respiration.
 
Mineral nutrientFunctions
Group 1: Nutrients that are part of carbon compounds
N (Nitrogen)Constituent of amino acids, amides, proteins, nucleic acids, nucleotides, coenzymes, hexosamines, etc.
S (Sulfur)Component of cysteine, cystine, methionine. Constituent of lipoic acid, coenzyme A, thiamine pyrophosphate, glutathione, biotin, 5'-adenylylsulfate, and 3'-phosphoadenosine.
Group 2: Nutrients that are important in energy storage or structural integrity
P (Phosphorus)Component of sugar phosphates, nucleic acids, nucleotides, coenzymes, phospholipids, phytic acid, etc. Has a key role in reactions that involve ATP.
Si (Silicon)Deposited as amorphous silica in cell walls. Contributes to cell wall mechanical properties, including rigidity and elasticity.
B (Boron)Complexes with mannitol, mannan, polymannuronic acid, and other constituents of cell walls. Involved in cell elongation and nucleic acid metabolism.
Group 3: Nutrients that remain in ionic form
K (Potassium)Required as a cofactor for more than 40 enzymes. Principal cation in establishing cell turgor and maintaining cell electroneutrality.
Ca (Calcium)Constituent of the middle lamella of cell walls. Required as a cofactor by some enzymes involved in the hydrolysis of ATP and phospholipids. Acts as a second messenger in metabolic regulation.
Mg (Magnesium)Required by many enzymes involved in phosphate transfer. Constituent of the chlorophyll molecule.
Cl (Chlorine)Required for the photosynthetic reactions involved in O2​ evolution.
Zn (Zinc)Constituent of alcohol dehydrogenase, glutamic dehydrogenase, carbonic anhydrase, etc.
Na (Sodium)Involved with the regeneration of phosphoenolpyruvate in C4​ and CAM plants. Substitutes for potassium in some functions.
Group 4: Nutrients that are involved in redox reactions
Fe (Iron)Constituent of cytochromes and nonheme iron proteins involved in photosynthesis, N2​ fixation, and respiration.
Mn (Manganese)Required for activity of some dehydrogenases, decarboxylases, kinases, oxidases, and peroxidases. Involved with other cation-activated enzymes and photosynthetic O2​ evolution.
Cu (Copper)Component of ascorbic acid oxidase, tyrosinase, monoamine oxidase, uricase, cytochrome oxidase, phenolase, laccase, and plastocyanin.
Ni (Nickel)Constituent of urease. In N2​-fixing bacteria, constituent of hydrogenases.
Mo (Molybdenum)Constituent of nitrogenase, nitrate reductase, and xanthine dehydrogenase.


Non-Essential but Beneficial Elements

Some elements, while not considered essential for all plants, can still accumulate in plant tissues and may even be beneficial. For example:

  • Aluminum (Al): Although not essential, some plants accumulate it, and small amounts can even stimulate growth.

  • Selenium (Se): Some plant species can accumulate large amounts of this element.

  • Cobalt (Co): It's not required by most plants, but it is essential for the function of nitrogen-fixing microorganisms that live in symbiosis with certain plants, as it is part of vitamin B12. Without cobalt, these nitrogen-fixing nodules cannot develop properly.

Mineral Deficiencies and Their Impact on Plants

When a plant doesn't get enough of an essential element, it develops a nutritional disorder with specific deficiency symptoms. In a controlled hydroponic environment, it's easy to link a missing element to a particular set of symptoms, like a change in leaf color. However, diagnosing deficiencies in soil-grown plants is more complex due to several factors:

  • Multiple Deficiencies: A plant might be lacking several elements at once.

  • Element Interactions: Too little or too much of one element can cause a deficiency of another.

  • Disease Mimicry: Symptoms of some viral diseases can look very similar to those of a nutrient deficiency.

These symptoms are the visible signs of metabolic disruptions caused by an insufficient supply of an essential element. The specific symptoms are directly related to the element's function in the plant.

The Mobility of Essential Elements

A key factor in diagnosing a nutrient deficiency is understanding how mobile an element is within the plant. The location of the symptoms—whether they appear in older or younger leaves first—provides a crucial clue.

  • Mobile Elements: Some elements, such as nitrogen (N), phosphorus (P), and potassium (K), can be easily moved from older, mature leaves to younger, actively growing leaves. If the supply of a mobile element is cut off, the plant will relocate it from the older leaves, causing deficiency symptoms to appear first in the older leaves.

  • Immobile Elements: Other elements, like boron (B), iron (Fe), and calcium (Ca), cannot be easily moved from older leaves. As a result, when the supply is inadequate, the younger leaves are the first to show symptoms because they are unable to receive the element from the older parts of the plant.

The specific symptoms and functions of each essential element are discussed in detail based on their biochemical roles, but it's important to remember that these symptoms can vary depending on the plant species.

The Roles and Deficiency Symptoms of Essential Elements

An insufficient supply of an essential element leads to a nutritional disorder, resulting in specific deficiency symptoms. The location of these symptoms—whether they first appear on older or younger leaves—is a crucial clue, as it depends on the element's mobility within the plant.

Group 1: Elements that are Part of Carbon Compounds

This group includes nitrogen (N) and sulfur (S). They are essential for building core organic molecules like proteins and nucleic acids.

  • Nitrogen (N): Plants need more nitrogen than any other mineral. It's a key component of chlorophyll, amino acids, and DNA. A nitrogen deficiency quickly stunts growth and causes chlorosis (yellowing of leaves), starting with the older leaves because nitrogen is highly mobile and is relocated to newer leaves. Severe deficiency can cause older leaves to turn tan and fall off. Plants may also develop slender, woody stems and a purple coloration in some species due to a buildup of other pigments.

  • Sulfur (S): Sulfur is a building block for important amino acids like cysteine and methionine, as well as several essential coenzymes. Symptoms of sulfur deficiency are similar to nitrogen deficiency—chlorosis, stunting, and purple coloration—because both are used to build proteins. However, sulfur is less mobile than nitrogen, so chlorosis usually appears in younger leaves first.

Group 2: Elements for Energy Storage and Structural Integrity

This group includes phosphorus (P), silicon (Si), and boron (B), which are often found in plants as ester linkages.

  • Phosphorus (P): Phosphorus (as phosphate) is a vital part of ATP (the plant's energy currency), DNA, and cell membranes. Deficiency symptoms include stunted growth, dark green leaves (which may be malformed and have dead spots), and sometimes a purple coloration due to excess pigment production. Unlike nitrogen deficiency, the purple color is not accompanied by chlorosis.

  • Silicon (Si): While only a few plant families absolutely require silicon to complete their life cycle, many species benefit from it. Silicon helps reinforce cell walls, making plants more resistant to falling over (lodging) and fungal infections.

  • Boron (B): Boron is critical for cell wall structure, cell elongation, and hormone regulation. A boron deficiency can cause black necrosis of young leaves and terminal buds, making stems brittle and causing the plant to lose apical dominance and become highly branched.

Group 3: Elements that Remain in Ionic Form

These elements, including potassium (K), calcium (Ca), and magnesium (Mg), are present as ions and are crucial for a variety of cellular processes.

  • Potassium (K): Potassium is essential for regulating osmotic potential and activating many enzymes. Since it's mobile, deficiency symptoms—like mottled or marginal chlorosis that turns into necrosis—start in older leaves. Stems can also become weak, and in some plants, root systems may become more susceptible to disease.

  • Calcium (Ca): Calcium has a structural role in cell walls and acts as a signal to regulate cellular processes. Because calcium is immobile, deficiency symptoms appear in younger leaves and meristematic regions (where cells divide rapidly), causing necrosis of root tips and young leaves.

  • Magnesium (Mg): Magnesium is the central atom in chlorophyll and is required to activate many enzymes. Like potassium, it is mobile, so its deficiency symptoms—interveinal chlorosis (yellowing between the veins)—first appear in older leaves.

Group 4: Elements Involved in Redox Reactions

This group consists of metals that can undergo reversible oxidation and reduction, making them essential for electron transfer reactions.

  • Iron (Fe): Iron is a component of enzymes involved in electron transfer and is crucial for chlorophyll synthesis. Unlike magnesium, iron is immobile, so its deficiency causes interveinal chlorosis that starts in younger leaves. In severe cases, the entire leaf can turn white.

  • Manganese (Mn): Manganese activates several enzymes and is essential for the splitting of water during photosynthesis. Deficiency symptoms include interveinal chlorosis and small necrotic spots on the leaves.

  • Copper (Cu): Copper is also involved in redox reactions, particularly in photosynthesis. A deficiency often results in dark green leaves with necrotic spots that appear at the tips of younger leaves.

  • Nickel (Ni): Nickel is required by only one known enzyme in higher plants, urease. Deficiency causes a buildup of urea and leaf tip necrosis.

  • Molybdenum (Mo): Molybdenum is a component of several important enzymes, including those for nitrogen fixation and nitrate reduction. A deficiency leads to general chlorosis and necrosis of older leaves. In some plants, it can cause "whiptail disease," where leaves are twisted and eventually die.

Solute transport


The plasma membrane, a protein-lipid bi-layer, is the primary barrier of a plant cell. It acts as a gatekeeper, regulating the flow of molecules and ions to maintain the cell's internal stability. This membrane facilitates nutrient uptake, waste removal, and maintains the cell's internal pressure, known as turgor pressure. It also detects signals from the environment, other cells, and pathogens.

Nutrient Transport: The movement of substances, or transport, is controlled by specialized membrane proteins. This process is crucial for both local movement within the cell and large-scale transport throughout the plant, such as the flow of sugar from leaves to roots.

Passive Transport

  • Definition: The spontaneous movement of molecules "downhill," from an area of higher free energy to an area of lower free energy or down a chemical potential gradient is called passive transport.

  • Driving Force: Driven by a concentration gradient (the difference in concentration between two areas). The process continues until equilibrium is reached, at which point there is no net movement of substances.

  • Follows Fick’s first law, where diffusion naturally occurs without the input of external energy.

Active Transport

  • Definition: The movement of molecules "uphill," against a gradient of chemical potential is called active transport.

  • Driving Force: This process is not spontaneous and requires an input of cellular energy to perform work. Often, this energy comes from the breakdown (hydrolysis) of ATP.

What is Chemical Potential?

  • Definition: Chemical potential is the partial molar Gibbs free energy of a substance. In simple terms, it's the energy change that occurs when one mole of a substance is added to a system, while keeping temperature and pressure constant.

  • Driving Force: It represents the "escaping tendency" of a substance. Molecules will naturally move from an area of higher chemical potential to an area of lower chemical potential.

  • Role in Transport: This energy difference, or gradient, is the driving force behind key processes like diffusion and osmosis, moving solutes across membranes until equilibrium is reached.


FeaturePassive TransportActive Transport
Energy RequirementNo metabolic energy required.Requires metabolic energy (e.g., ATP) to move substances uphill.
Direction of MovementDown the electrochemical potential gradient (from high energy/potential to low energy/potential).Against the electrochemical potential gradient (uphill).
Rate/SaturationCan occur via simple diffusion (no saturation) or facilitated diffusion (can saturate, Vmax).Always involves specific proteins; rate is usually slow and saturable (Vmax).
Transport Proteins UsedChannels and certain Carriers (Uniporters).Pumps (Primary Active Transport) and Cotransporters (Secondary Active Transport).


Diffusion

Diffusion is fundamentally the net movement of particles (such as atoms, ions, or molecules) from a region of higher concentration to a region of lower concentration. This process is driven by the random motion of the particles (often described as Brownian motion), which is a result of their inherent kinetic energy, and it continues until the particles are uniformly distributed, reaching a state of equilibrium where there is no net change in concentration. 

This movement is always down the concentration gradient and does not require an input of external energy, making it a form of passive transport in many contexts, especially biology.

Transport of ions Across Membrane

  • Permeability: This is the extent to which a membrane allows a substance to pass through. It depends on both the membrane's composition and the chemical properties of the solute.

  • Effect on Diffusion: Membranes generally hinder diffusion, slowing down the process of reaching equilibrium. However, the membrane's permeability itself does not change the final equilibrium state, which is reached when the difference in electrochemical potential (Δμ) is zero.

How Membranes Transport Substances

Unlike simple artificial membranes, biological membranes are highly selective and much more permeable to ions, water, and large polar molecules. This is because they contain specialized transport proteins that facilitate the movement of specific substances across the membrane. These proteins fall into three main categories: channels, carriers, and pumps.

Channels (Enhanced diffusion)

  • Function: Channels are transmembrane proteins that act as selective pores. Substances diffuse through these pores very rapidly, with millions of ions passing through per second.

  • Transport Type: Transport through channels is always passive, meaning it follows the electrochemical gradient without needing extra energy.

  • Specificity: Their selectivity is based on the pore size and the charge of their inner lining.

  • Regulation: Channels are not always open. They have "gates" that open or close in response to various signals, such as changes in voltage (voltage-gated channels), chemical signals like hormones, or even mechanical force.

  • Directionality: Some channels are inwardly rectifying, allowing substances like K+ to move into the cell, while others are outwardly rectifying, allowing them to exit.

FeatureInward Rectifying Channels (Inward Rectifiers)Outward Rectifying Channels (Outward Rectifiers)
Main Direction of Ion FlowFacilitate inward flow of K+ ions into the cellFacilitate outward flow of K+ ions out of the cell
Mechanism of RectificationBlockage of outward current at depolarized potentials by intracellular Mg2+ and polyaminesGating or voltage-dependent opening predominantly at depolarized potentials
Key Regulatory MechanismBlock of channel pore by endogenous blockers (Mg2+, polyamines) at positive voltagesActivation primarily at positive membrane potentials
Current FlowMore inward current compared to outward at certain voltage rangesMore outward current when channel is open at positive voltages
Physiological RoleMaintains resting membrane potential, stabilizes cell excitabilityFacilitates repolarization and electrical activity during depolarization
Channel BehaviorOpen at negative potentials, blocked at positive potentialsOpen mostly at positive potentials, limited at negative potentials
Channel ExamplesK_ir1, K_ir2.1, K_ir3.1, etc.Voltage-gated K+ channels, delayed rectifiers, etc.
Key FeaturesHigh affinity block by intracellular molecules causes rectificationVoltage-dependent gating mechanism allows activation at depolarized states


Carriers

  • Function: Carrier proteins do not form a continuous pore. They bind a specific substance, undergo a conformational change to move it across the membrane, and then release it on the other side.

  • Transport Rate: This process is much slower than channel transport, typically moving only a few hundred to a thousand molecules per second.

  • Specificity: Carriers are highly specific due to the need for a substance to bind to a specific site. They often transport specific ions, sugars, or amino acids.

  • Transport Type: Carrier-mediated transport can be either passive (also called facilitated diffusion) or active (Secondary active transport), where it's coupled with another energy-releasing event.

  • Categories: Carriers can be uniporters (passively transport a single substance) or co-transporters (actively transport two substances in a coupled fashion).

Membrane transport proteins

Pumps

  • Function: Pumps are membrane proteins that perform primary active transport, moving substances against their electrochemical gradient. This requires a direct input of energy, often from the breakdown of ATP or from light.

  • Energy Source: Directly uses energy from:

    • ATP Hydrolysis (e.g. H+- ATPase)

    • Oxidation-Reduction Reactions

    • Absorption of Light

  • Categorization: Pumps can be of two types:

    • Electrogenic: moving a net electrical charge across the membrane (e.g., the H+-ATPase pumps H+ out, generating a voltage)
    • Electroneutral: no net charge movement (e.g., an H+/K+ pump exchanging H+ out for K+ in)

  • Significance: In plants, H+-ATPases are the most common electrogenic pumps. They actively pump protons out of the cell, which is a major factor in establishing the membrane potential. This creates Proton Motive Force (PMF), which is stored free energy used to drive secondary active transport.

Secondary Active Transport (Co-transport)

  • How it Works: This process uses the stored energy from one substance's downhill movement to drive the uphill transport of another. It's an indirect form of active transport.

  • The Driving Force: In plants, the strong proton gradient (or proton motive force) created by the H+-ATPases is the main source of energy for secondary active transport.

  • Types:

    • Symport: Two substances are moved in the same direction at the same time. Typically drives substrate uptake into the cytosol. For example, a proton and a sucrose molecule enter the cell together.

    • Antiport: Two substances are moved in opposite directions. Typically drives substrate export out of the cytosol. For instance, a proton moves into the cell while a sodium ion moves out.

Types of carriers

FeatureChannelsCarriersPumps
MechanismForms a selective pore (always passive).Solute binds, protein undergoes conformational change (passive or active).Solute binds, conformational change driven by direct energy (always active).
Energy SourceNone (Passive Transport / Enhanced Diffusion).None for Facilitated Diffusion; Uses stored energy in an H+ or other ion gradient—the Proton Motive Force in plants for secondary active transportPrimary Active Transport (e.g., ATP hydrolysis, light absorption, oxidation-reduction reaction).
SpeedExtremely rapid (≈108 ions/sec).Slower (≈102 to 103 molecules/sec).Slow (≈102 to 103 ions/sec).
Gating / RegulationContains gates (voltage-gated, ligand-gated, mechanosensitive, phosphorylation-regulated).Transport is regulated by substrate binding kinetics (saturation).Regulated by energy availability and specific physiological signals.


FeatureUniporterSymporterAntiporter
Transport TypePassive Transport (Facilitated Diffusion)Secondary Active TransportSecondary Active Transport
Number of Solutes TransportedOne (a single type of molecule or ion).Two (the solute of interest and a co-transported ion, usually H+ or Na+).Two (the solute of interest and a co-transported ion).
Direction of MovementUnidirectional (always down its own concentration gradient).Both solutes move in the SAME direction across the membrane.The two solutes move in OPPOSITE directions across the membrane.
Energy SourceDriven directly by the solute's concentration gradient.Driven by the downhill movement of the co-transported ion (e.g., H+ PMF).Driven by the downhill movement of the co-transported ion.
Mechanism AnalogyResembles a simple revolving door for one substance.Resembles a turnstile where two people must enter together in the same direction.Resembles a seesaw where one person going down pushes another person up/out.
General Function in PlantsFacilitates the movement of specific substances down their gradient (e.g., simple glucose transport).Typically drives uptake of the solute into the cytosol, using the inward H+ gradient.Typically drives the export of a solute out of the cytosol, using the inward H+ gradient.

Monday, 13 April 2026

Carbohydrate Biochemistry (Part II)

To access and download PowerPoint presentation on 'Carbohydrate Biochemistry' click on the link below:

 

Disaccharides

Disaccharides consist of two monosaccharides joined covalently by an O-glycosidic bond, which is formed when a hydroxyl group of one sugar reacts with the anomeric carbon of the other.

Example: maltose, lactose, and sucrose

Glycosidic bonds are readily hydrolyzed by acid but resist cleavage by base. Thus disaccharides can be hydrolyzed to yield their free monosaccharide components by boiling with dilute acid.

N-glycosyl bonds join the anomeric carbon of a sugar to a nitrogen atom in glycoproteins and nucleotides.

General formula: Cₙ(H2O)ₙ₋₁



The oxidation of a sugar’s anomeric carbon by cupric or ferric ion (the reaction that defines a reducing sugar) occurs only with the linear form, which exists in equilibrium with the cyclic form(s).

When the anomeric carbon is involved in a glycosidic bond, that sugar residue cannot take the linear form and therefore becomes a non-reducing sugar.

The end of a chain with a free anomeric carbon (one not involved in a glycosidic bond) is commonly called the reducing end.

The disaccharide maltose contains two D-glucose residues joined by a glycosidic linkage between C-1 (the anomeric carbon) of one glucose residue and C-4 of the other.

Because the disaccharide retains a free anomeric carbon (C-1 of the glucose residue on the right), maltose is a reducing sugar.

Nomenclature of disaccharides (or oligosaccharides)

By convention, the name describes the compound with its nonreducing end to the left.

Give the configuration (α or β) at the anomeric carbon joining the first monosaccharide unit (on the left) to the second.

Name the nonreducing residue; to distinguish five- and six-membered ring structures, insert “furano” or “pyrano” into the name.

Add suffix '-syl' to the name of the first residue. For example, 'glucopyranosyl'.

Indicate in parentheses the two carbon atoms joined by the glycosidic bond, with an arrow connecting the two numbers; for example, (1🠊4) shows that C-1 of the first-named sugar residue is joined to C-4 of the second. 

If the anomeric carbons from both residues are involved in bond formation, a double headed arrow is given.

Name the second residue similarly. Add suffix '-ose' to the name of the second residue in case of reducing sugars and '-oside' in case of non-reducing sugars.

If there is a third residue, describe the second glycosidic bond by the same conventions.

Short name:Glc(α1🠊4)Glc





Sucrose

Sucrose (cane sugar) is made up of α-D-glucose and β-D-fructose linked by a glycosidic bond (α1 ⟺ β2). 

The reducing  groups (anomeric carbon) of both glucose and fructose are involved in glycosidic bond formation. Hence, sucrose is non-reducing sugar and it cannot form osazones.

The systematic name of sucrose is α-D-glucopyranosyl-(1 ⟺ 2)- β-D-fructofuranoside
This indicates:
It is composed of two monosaccharides: glucose and fructose
Ring type: Glucose is pyranose and fructose is furanose
Linkage: oxygen on C1 of α-D-glucose  is linked to C2 of β-D-fructose 
Suffix '–oside' and '⟺' indicates that the anomeric carbons of both the monosaccharides participate in glycosidic bond formation

Sucrose is a major carbohydrate produced in photosynthesis. It has the advantage as storage and transport as its functional groups are held together and are protected from oxidative attacks.

Intestinal enzyme, sucrase hydrolyze sucrose to glucose and fructose.



Inversion of sucrose:

Sucrose is dextrorotatory (+66.5°). But when hydrolyzed, it becomes levorotatory (-28.2°). The process of change in optical rotation from dextrorotatory(+) to levorotatory (-) is referred to as inversion. The hydrolyzed mixture of sucrose, containing glucose and fructose, is known as invert sugar.

Sucrose first splits into α-D-glucopyranose (+) and β-D-fructofuranose (+). But β-D-fructofuranose is less stable and gets converted into β-D-fructopyranose (-). The overall effect in the mixture becomes levorotatory (-).

Lactose

Lactose (milk sugar) is composed of β-D-galactose and β-D-glucose held together by   β(1🠊4) glycosidic bond.

The anomeric carbon of C1 of glucose is free. Hence lactose exhibits reducing properties and forms osazones (powder-puff or hedgehog shape).

The systematic name is β-D-galactopyranosyl-(1🠊4)-β-D-glucopyranose.

It is hydrolyzed by intestinal enzyme lactase into glucose and galactose.


Maltose

Maltose (malt sugar) is produced during digestion of starch by enzyme amylase.

Maltose is composed of two α-D-glucose  units held together by α(1🠊4) glycosidic bond. 

A free aldehyde group is present on C1 of the second glucose unit and hence maltose exhibits reducing properties and forms osazones (sunflower shaped).

It can be hydrolyzed by dilute acid or enzyme maltase.
 
In isomaltose, the glucose units are held together by α(1🠊6) glycosidic bond.


Cellobiose

It is identical to maltose, except that in it the linkage is  β(1🠊4) glycosidic bond.
It is formed during hydrolysis of cellulose.

Trehalose

It is identical to maltose, except that in it the linkage is  (α1⇔α1) glycosidic bond.
It is formed during hydrolysis of cellulose.
It is a non-reducing sugar.


Examples of other oligosaccharides

Raffinose (trisaccharides): Fructose+Galactose+Glucose
Stachyose (Tetrasaccharide):  Galactose+Galactose+Glucose+Fructose
Verbascose (Pentasaccharide): Galactose+Galactose+Galactose+Glucose+Fructose

Polysaccharides

Carbohydrates containing repeating units (more than 10 units) of the monosaccharides or their derivatives linked by glycosidic linkages are called polysaccharides.

They are primarily concerned with 2 important functions:
Structural role
Storage of energy

Polysaccharides can be linear or branched. The occurrence of branched polysaccharides is due to the fact that glycosidic linkages can be formed at any one of the –OH groups of a monosaccharide.

Polysaccharides are of high molecular weight. They are usually tasteless (non-sugars) and form colloids with water.

Polysaccharides are of two types:

Homopolysaccharides (Homoglycans): They, on hydrolysis, yield only one type of monosaccharide. They are named based on the nature of the monosaccharide unit. 
Example: Glucan (polymer of glucose), Fructosan (polymer of fructose)

Heteropolysaccharides (heteroglycans): They, on hydrolysis, yield a mixture of a few types of monosaccharide units or their derivatives. 

Example: Peptidoglycan (polymer of N-acetylglucosamine and N-acetylmuramic acid residues)


Starch

Starch is the carbohydrate reserve of plants which is the most important dietary source for higher animals.

Starch is a homopolysaccharide composed of D-glucose units held by glycosidic bonds. 

It is known as glucosan or glucan.

Starch consists of two polysaccharide components:
Water soluble amylose (15-20%)
Water insoluble amylopectin (80-85%)

Chemically amylose is a long unbranched chain with 200-1000 D-glucose units held by (α1🠊4) glycosidic linkage.

Amylopectin is a branched chain with (α1🠊6) glycosidic bonds at the branching points and (α1🠊4) glycosidic bonds everywhere else.

Starches are hydrolyzed by amylases (pancreatic or salivary) to liberate dextrins and finally maltose and glucose units. Amylase acts specifically on the (α1🠊4) glycosidic bonds.


(b) amylopectin


Dextrins

These are the breakdown products of starch by the enzyme amylase or dilute acids.
Starch is hydrolyzed through different dextrins and finally to maltose and glucose. 
The various intermediates (identified by iodine coloration) are soluble starch (blue), amylodextrin (violet), erythrodextrin (red) and achrodextrin (no colour).

Inulin

Inulin is a polymer of fructose.
It occurs in dahlia bulbs, garlic, onion, etc.
It is a low molecular weight (~ 5000) polysaccharide easily soluble in water.
Inulin is not utilized by the body. 
It is used for assessing kidney function through measurement of glomerular filtration rate (CFR).

Cellulose

Cellulose occurs extensively in plants and is totally absent in animals.

Cellulose is composed of β-D-glucose units linked by β(1🠊4) glycosidic bonds.

Cellulose can not be digested by mammals due to lack of the enzyme that cleaves β-glycosidic bonds. Hydrolysis of cellulose yields a disaccharide, cellobiose, which is further broken down to β-D-glucose units.

It is a major constituent of fibers, the non-digestible carbohydrate.


Glycogen

Glycogen is the main storage polysaccharide of animal cells.

Like amylopectin, glycogen is a polymer of (α1🠊4)-linked subunits of glucose, with (α1🠊6)-linked branches, but glycogen is more extensively branched (on average, every 8 to 12 residues) and more compact than starch.

Glycogen is especially abundant in the liver, it is also present in skeletal muscle.



Chitin

Chitin is a linear homopolysaccharide composed of N-acetylglucosamine residues in β linkage.

The only chemical difference from cellulose is the replacement of the hydroxyl group at C-2 with an acetylated amino group. 



Peptidoglycan

The rigid component of bacterial cell walls is a  heteropolymer  of  alternating (β1🠊4)-linked N-acetylglucosamine and N-acetylmuramic acid residues.

The enzyme lysozyme kills bacteria by hydrolyzing the   (β1🠊4) glycosidic bond between N-acetylglucosamine and Nacetylmuramic acid.


Carbohydrate biochemistry (Part I)

To access and download PowerPoint presentation on 'Carbohydrate Biochemistry' click on the link below:


 Carbohydrates

Carbohydrates are polyhydroxy aldehydes or ketones, or substances that yield such compounds on hydrolysis.

Many, but not all, carbohydrates have the empirical formula (CH₂O)ₙ, [n≥3];  some also contain nitrogen, phosphorus, or sulfur.

Carbohydrate literally means ‘hydrates of carbon’.

Carbohydrates are the most abundant biomolecules on Earth.



Occurrence & Function

Certain carbohydrates (sugar and starch) are a dietary staple and abundant dietary source of energy (4 cal/g) 

Insoluble carbohydrate polymers serve as structural and protective elements:
       in the cell walls of bacteria and plants
       in the connective tissues of animals
       lubricate skeletal joints
       participate in recognition and adhesion between cells

Complex carbohydrate polymers that are covalently attached to proteins or lipids are called glyco-conjugates.
act as signals that determine the intracellular location or metabolic fate of these hybrid molecules

Carbohydrates are precursors of many organic molecules (fats, amino acids, etc.)

They serve as storage form of energy (Ex- Glycogen, Starch)

Classification

The word “saccharide” is derived from the Greek ‘sakcharon’, meaning “sugar”.

Monosaccharides (simple sugars): Consist of a single polyhydroxy aldehyde or ketone unit. Ex- Glucose, Fructose

Glucose

Oligosaccharides: Consist of short chains of monosaccharide units, or residues (2-10), joined by characteristic linkages called glycosidic bonds. Ex- Raffinose

Raffinose

Disaccharides: Consists of  two monosaccharide units joined by glycosidic bond. Ex- Sucrose (Glucose + Fructose)
Sucrose

Polysaccharides: Sugar polymers containing more than 20 or so monosaccharide units, and some have hundreds or thousands of units. Ex- Cellulose, Glycogen


Monosaccharides

Simplest carbohydrates that cannot be hydrolyzed to smaller carbohydrates.

General chemical formula of unmodified monosaccharide is (C.H₂O)ₙ  where n≥3

Consist of a single polyhydroxy aldehyde or ketone unit. 

The most abundant monosaccharide in nature is the six-carbon sugar D-glucose. 

Monosaccharides of more than four carbons tend to have cyclic structures.

Ex- Glyceraldehyde, Glucose, Fructose, etc. 

Classification of monosaccharides

Classified according to 3 different characteristics:
Placement of its carbonyl group
Number of carbon atoms present
Chiral handedness

Classification based on placement of carbonyl group

ALDOSE: Functional group is an aldehyde group (-CHO)
Ex- Glyceraldehyde, Glucose, etc
KETOSE: Functional group is a keto group (>C=O)
Ex- Dihydroxyacetone, Fructose, etc.



Classification based on number of carbon atoms

On the basis of the number of carbon atoms present, monosaccharides can be classified as:
Triose (3 C)
Tetrose (4 C)
Pentose (5 C)
Hexose (6 C)
Heptose (7 C)



Stereoisomers

Stereoisomers: Compounds that have same structural formulae but differ in their spatial configuration. 

A carbon is said to be asymmetric (chiral) when it is attached to four different atoms or groups. 

The number of asymmetric carbon atoms (n) determines the possible number of isomers of a given compound which is equal to 2ⁿ

Stereoisomerism is a characteristic feature of all sugars except Dihydroxyacetone. 

Example- 
    Glucose has 4 asymmetric carbon atoms. No. of isomers = 2⁴ = 16
   Glyceraldehyde has 1 asymmetric carbon atom. No. of isomers = 2¹ = 2
   Dihydroxyacetone has no asymmetric carbon atoms. Hence, no isomer is possible.

Classification based on chiral handedness

D and L isomers: Assignment of D or L isomer is made according to the orientation of the asymmetric carbon atom furthest from the carbonyl group.

In a standard Fischer projection if the hydroxyl group is on the right, the molecule is D sugar, and if the hydroxyl group is on the left, the molecule is L sugar. 

D-sugars are biologically more common.


Optical activity of sugars

It is the characteristic feature of compounds with asymmetric carbon atoms. 

When a beam of polarized light is passed through a solution of an optical isomer, it will be rotated to either the right or left. 

The terms dextrorotatory (+) and levorotarory (-) are used to compounds that respectively rotate the plane of polarized light to the right or to the left.

It may be noted that the D and L configurations of sugars are primarily based on the structure, optical activities may be different.
Racemic mixture: If dextrorotatory and levorotatory isomers are present in equal concentration, it is known as racemic mixture or DL mixture. Racemic mixture does not exhibit any optical activity, since the dextro- and levorotatory activities cancel each other.

Epimers

If two monosaccharides differ from each other in their configuration around a single specific carbon (other than anomeric carbon), they are referred to as epimers to each other.

D-glucose and D-mannose differ only in the stereochemistry at C-2, are epimers.

D-glucose and D-galactose which differ at C-4, are epimers.
Inter-conversions of epimers (eg.- glucose to galactose and vice versa) is known as epimerization and is catalyzed by a group of enzymes called epimerases.

Common Monosaccharides Have Cyclic Structures

In aqueous solution, aldotetroses and all monosaccharides with five or more carbon atoms in the backbone occur predominantly as cyclic (ring) structures in which the carbonyl group has formed a covalent bond with the oxygen of a hydroxyl group along the chain. 

The formation of these ring structures is the result of a general reaction between alcohols and aldehydes or ketones to form derivatives called hemiacetals or hemiketals

These structures contain an additional asymmetric carbon atom and thus can exist in two stereoisomeric forms.
Hemiacetal formation
Hemiketal formation

D-glucose exists in solution as an intramolecular hemiacetal in which the free hydroxyl group at C-5 has reacted with the aldehydic C-1, rendering the latter carbon asymmetric and producing two stereoisomers, designated  as α and β.

These six-membered ring compounds are called pyranoses because they resemble the six membered ring compound pyran.

The systematic names for the two ring forms of D-glucose are α-D-glucopyranose  and β-D-glucopyranose.

Only aldoses having five or more carbon atoms can form pyranose rings.

Aldohexoses and ketohexoses also exist in cyclic forms having five membered rings, which, because they resemble the five membered ring compound furan, are called furanoses.


The six-membered aldopyranose ring is much more stable than the aldofuranose ring and predominates in aldohexose solutions.

Anomers

Isomeric forms of monosaccharides that differ only in their configuration about the hemiacetal or hemiketal carbon atom are called anomers.

The hemiacetal (or carbonyl) carbon atom is called the anomeric carbon.

In case of α-anomer, the –OH group held by anomeric carbon is on the opposite side of the –CH2OH group of the sugar ring. The opposite is true for β-anomers.

The α- and β-anomers of D-glucose interconvert in aqueous solution by a process called mutarotation.

Thus, a solution of α-D-glucose and a solution of β-D-glucose eventually form identical equilibrium mixtures having identical optical properties. This mixture consists of about one-third α-D-glucose (36%), two-thirds β-D-glucose (63%), and very small amounts of the linear and five-membered ring (glucofuranose) forms (1%).
             
 D-glucose      ⃡       Equilibrium mixture        ⃡         β-D-glucose 
   +112.2°                             +52.7°                                  +18.7°


Ketohexoses also occur in α and β anomeric forms.

In these compounds the hydroxyl group at C-5 (or C-6) reacts with the keto group at C-2, forming a furanose (or pyranose) ring containing a hemiketal linkage.

D-Fructose readily forms the furanose ring, the more common anomer of this sugar in combined forms or in derivatives is D-fructofuranose.

The specific optical rotation of fructose is -92° at equilibrium. 

Monosaccharides Are Reducing Agents

Monosaccharides can be oxidized by relatively mild oxidizing agents such as ferric (Fe3+) or cupric (Cu2+).

The carbonyl carbon is oxidized to a carboxyl group.

Sugars capable of reducing ferric or cupric ion are called reducing sugars. They have free aldehyde or ketone group present in their structure.
Ex- Glucose

Sugars not capable of reducing ferric or cupric ion are called non-reducing sugars. They do not have free aldehyde or ketone group present in their structure.
Ex- Sucrose

This property is the basis of Fehling’s reaction, a qualitative test for the presence of reducing sugar.

Monosaccharide derivatives

There are a number of sugar derivatives in which a hydroxyl group in the parent compound is replaced with another substituent, or a carbon atom is oxidized to a carboxyl group.

  • In amino sugars, an –NH2 group replaces one of the -OH groups in the parent hexose. 
  • Substitution of –H for –OH produces a deoxy sugar.
  • The acidic sugars contain a carboxyl group, which confers a negative charge at neutral pH.


Sugar acids: Oxidation of aldehyde or primary alcohol groups in the monosaccharide results in sugar acids.
The acidic sugars contain a carboxyl group, which confers a negative charge at neutral pH.
Examples:
Gluconic acid is produced from glucose by oxidation of aldehyde group.
Glucuronic acid is formed from glucose by oxidation of primary alcohol group (C6).

Amino sugars: When one or more hydroxyl groups of the monosaccharide are replaced by amino groups, the products formed are called amino sugars.
They are present as constituents of heteropolysaccharides.
Examples:
D-glucosamine
D-galactosamine
They are sometimes acetylated.
Example:
N-acetyl-D-glucosamine

Deoxysugars: They contain one oxygen less than that of their parent molecule. 
The groups –CHOH and –CH2OH become –CH2 and –CH3 due to absence of one oxygen atom.
Examples: 
D-2-Deoxyribose
L-Rhamnose
L-Fucose

Sugar alcohols: Sugar alcohols (polyols) are produced by reduction of aldoses or ketoses.
Examples: 
Sorbitol from glucose
Mannitol from mannose

Alditols: The monosaccharides on reduction yield polyhydroxy alcohols known as alditols.
Examples:
Ribitol (constituent of flavin coenzymes)
Glycerol (Component of lipid)
Xylitol (Sweetener used in sugarless gums and candies)